MRIQC: individual T1w report

Summary

  • BIDS filename: sub-231101IBLS02_ses-231101IBLS02_T1w.
  • Date and time: 2023-11-23, 08:46.
  • MRIQC version: 22.0.6.

Visual reports

Zoomed-in (brain mask)
2023-11-09T14:42:34.223448 image/svg+xml Matplotlib v3.5.2, https://matplotlib.org/
Background noise
2023-11-09T14:17:13.829432 image/svg+xml Matplotlib v3.5.2, https://matplotlib.org/

Other

cjv0.3609529356300591
cnr3.598619806669339
efc0.5773906520868097
fber11288.292585591262
fwhmavg4.058023333333333
fwhmx4.26038
fwhmy4.14507
fwhmz3.76862
icvscsf0.22255566176794614
icvsgm0.42319373425092205
icvswm0.35425060398113184
inumed0.5270328521728516
inurange0.21127622574567795
qi12.0223060355723633e-05
qi20.003449920283194974
rpvecsf19.978500611846922
rpvegm10.771963312626635
rpvewm14.86800622177038
sizex176
sizey240
sizez256
snrcsf2.3070383370873855
snrgm9.760946059378423
snrtotal11.890449998009585
snrwm23.603365597562945
snrdcsf23.174006741031555
snrdgm70.34826259364256
snrdtotal64.88355830742391
snrdwm101.1284055875976
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1415.698565637623
summarybgmad6.47809537000027
summarybgmean7.294760387976912
summarybgmedian4.369408927857876
summarybgn2943587.0
summarybgp050.0
summarybgp9524.97543801367283
summarybgstdv16.726895529030674
summarycsfk0.880289115292312
summarycsfmad93.72155727603942
summarycsfmean243.7133794456424
summarycsfmedian229.14835105091333
summarycsfn55608.0
summarycsfp05109.49376810342073
summarycsfp95435.225447328016
summarycsfstdv99.32487335290412
summarygmk0.05697428415867156
summarygmmad69.41911665722183
summarygmmean697.024150145573
summarygmmedian695.6150722131133
summarygmn33149.0
summarygmp05580.6039557948709
summarygmp95818.1188200354576
summarygmstdv71.26405326432702
summarywmk0.41421103827590633
summarywmmad40.44018115591885
summarywmmean999.3077666205476
summarywmmedian999.9741367027164
summarywmn237006.0
summarywmp05928.6157423779368
summarywmp951067.2216670066118
summarywmstdv42.36565429495651
tpmoverlapcsf0.16608310909615706
tpmoverlapgm0.4676646456480538
tpmoverlapwm0.521670114151025
wm2max0.6809177479722445

AcquisitionMatrixPE240
AcquisitionNumber1
AcquisitionTime11:55:56.062500
BaseResolution256
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20210317
DataSource{'application/x-xnat': {'experiment': '231101_IBL_S02', 'experiment_id': 'CNC_Archive_E02734', 'project': 'Reinhart_IBL', 'scan': 7, 'subject': '231101_IBL_S02', 'subject_id': 'CNC_Archive_S02521', 'url': 'https://xnat.bu.edu'}}
DeviceSerialNumber166024
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[0.00886408, 0.997264, -0.0733949, 0.021191, -0.0735686, -0.997065]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.249
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressCommonwealth Ave. 610,Boston,Massachusetts,US,02215
InstitutionNameBU
InstitutionalDepartmentNameResearch
InversionTime1.1
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma
ModalityMR
NumberOfAverages4
ParallelReductionFactorInPlane3
PartialFourier1
PatientPositionHFS
PercentPhaseFOV93.75
PercentSampling100
PhaseEncodingSteps238
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionINVESTIGATORS^Reinhart
ProtocolNameT1_MEMPRAGE_1.0mm_p3
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1
ReceiveCoilNameHeadNeck_64
ReconMatrixPE240
RefLinesPE32
RepetitionTime2.53
SAR0.0370875
ScanOptionsIR
ScanningSequenceGR\IR
SequenceNametfl3d4_16ns
SequenceVariantSK\SP\MP
SeriesDescriptionT1_MEMPRAGE_1.0mm_p3 RMS
SeriesNumber7
ShimSetting[-925, -7137, 3764, 139, -99, -646, -157, -21]
SliceThickness1
SoftwareVersionssyngo MR E11
StationNameAWP166024-4CA74C
TxRefAmp240.054
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot

md5sumc9652695037ed45b6a0df330b0c813c6
softwaremriqc
version22.0.6
Rate Image

  • Exclude
  • Poor
  • Acceptable
  • Excellent

Comments

Rater confidence:

  • Doubtful
  • Confident
Download

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.